Publications

This link will take you to a selection of our published edits via Google Scholar.

Pacific Edit @ Google Scholar

Below is a select list of previous papers we have edited which have been accepted for publication:

  • Skeletal Biology and Medicine, Part A: Aspects of Bone Morphogenesis and Remodeling, Volume 1116, December 2007; The Role of NFAT in Osteoclast Formation. Hiroshi Takayanagi.
  • IBMS BoneKEy, Sep 2006; Amazing Multifunctionality of Calcineurin and NFAT Signaling in Bone Homeostasis. Hiroshi Takayanagi.
  • IBMS BoneKEy, Nov 2005; All Interferons are Not Equal: Specific Mechanisms of Interfering with Osteoclastogenesis. Hiroshi Takayanagi.
  • Free Radic Biol Med. 2003 Sep 15;35(6):576-85; A novel method of following oxidation of low-density lipoprotein using a sensitive fluorescent probe, diphenyl-1-pyrenylphosphine. Okimoto Y, Warabi E, Wada Y, Niki E, Kodama T, Noguchi N.
  • Biochem Biophys Res Commun. 2003 Aug 15;308(1):191-6; A novel method for viral display of ER membrane proteins on budded baculovirus. Urano Y, Yamaguchi M, Fukuda R, Masuda K, Takahashi K, Uchiyama Y, Iwanari H, Jiang SY, Naito M, Kodama T, Hamakubo T.
  • J Biol Chem. 2003 Jul 10 [Epub ahead of print]. Sterol regulatory element-binding protein-2 interacts with hepatocyte nuclear factor-4 to enhance sterol isomerase gene expression in hepatocytes. Misawa K, Horiba T, Arimura N, Hirano Y, Inoue J, Emoto N, Shimano H, Shimizu M, Sato R.
  • Free Radic Biol Med. 2003 Jun 15;34(12):1614-20 Inhibition of THP-1 cell adhesion to endothelial cells by alpha-tocopherol and alpha-tocotrienol is dependent on intracellular concentration of the antioxidants. Noguchi N, Hanyu R, Nonaka A, Okimoto Y, Kodama T
  • Biochem Biophys Res Commun. 2003 Jun 20;306(1):169-76 Existence of catalase-less peroxisomes in Sf21 insect cells. Kurisu M, Morita M, Kashiwayama Y, Yokota S, Hayashi H, Sakai Y, Ohkuma S,
  • Nucl Recept. 2003 May 9;1(1):1. Epub 2003 May 09. Establishment of a monoclonal antibody for human LXRalpha: Detection of LXRalpha protein expression in human macrophages. Watanabe Y, Tanaka T, Uchiyama Y, Takeno T, Izumi A, Yamashita H, Kumakura J, Iwanari H, Shu-Ying J, Naito M, Mangelsdorf DJ, Hamakubo T, Kodama T.
  • J Biol Chem. 2003 Jul 4;278(27):24552-62. Epub 2003 Apr A combinatorial G protein-coupled receptor reconstitution system on budded baculovirus. Evidence for Galpha and Galphao coupling to a human leukotriene B4 receptor. Masuda K, Itoh H, Sakihama T, Akiyama C, Takahashi K, Fukuda R, Yokomizo T, Shimizu T, Kodama T, Hamakubo T.
  • Int J Cancer. 2003 Feb 10;103(4):455-65 Glypican-3, overexpressed in hepatocellular carcinoma, modulates FGF2 and BMP-7 signaling. Midorikawa Y, Ishikawa S, Iwanari H, Imamura T, Sakamoto H, Miyazono K, Kodama T, Makuuchi M, Aburatani H.
  • J Biol Chem. 2002 Dec 27;277(52):51058-67. Epub 2002 Oct 23. Intracellular accumulation of antithrombin Morioka (C95R), a novel mutation causing type I antithrombin deficiency. Tanaka Y, Ueda K, Ozawa T, Sakuragawa N, Yokota S, Sato R, Okamura S, Morita M, Imanaka T.
  • Free Radic Res. 2002 Nov;36(11):1171-8. Yoshida Y, Noguchi N, Watanabe A, Iwaki Y, Yanagisawa M, Kodama T, Cynshi O, Niki E. Antioxidant action of 2,2,4,6-tetra-substituted 2,3-dihydro-5-hydroxybenzofuran against lipid peroxidation: effects of substituents and side chain.
  • Arterioscler Thromb Vasc Biol. 2002 Oct 1;22(10):1712-9 Lipid accumulation in smooth muscle cells under LDL loading is independent of LDL receptor pathway and enhanced by hypoxic conditions. Wada Y, Sugiyama A, Yamamoto T, Naito M, Noguchi N, Yokoyama S, Tsujita M, Kawabe Y, Kobayashi M, Izumi A, Kohro T, Tanaka T, Taniguchi H, Koyama H, Hirano K, Yamashita S, Matsuzawa Y, Niki E, Hamakubo T, Kodama T.
  • Dev Cell. 2002 Dec;3(6):889-901. Induction and activation of the transcription factor NFATc1 (NFAT2) integrate RANKL signaling in terminal differentiation of osteoclasts. Takayanagi H, Kim S, Koga T, Nishina H, Isshiki M, Yoshida H, Saiura A, Isobe M, Yokochi T, Inoue J, Wagner EF, Mak TW, Kodama T, Taniguchi T.
  • Transpl Int. 2002 Nov;15(11):535-40. Epub 2002 Sep 27 Gene expression profile during acute rejection in rat-to-mouse concordant cardiac xenograft by means of DNA microarray. Saiura A, Sugawara Y, Harihara Y, Sata M, Hamakubo T, Kodama T, Makuuchi M.
  • Jpn J Cancer Res. 2002 Jun;93(6):636-43 Identification of genes associated with dedifferentiation of hepatocellular carcinoma with expression profiling analysis. Midorikawa Y, Tsutsumi S, Taniguchi H, Ishii M, Kobune Y, Kodama T, Makuuchi M, Aburatani H.
  • Hepatol Res. 2002 Jun;23(2):90-97 Measurement of HCV RdRp activity with C-terminal 21 aa truncated NS5b protein: optimization of assay conditions. Uchiyama Y, Huang Y, Kanamori H, Uchida M, Doi T, Takamizawa A, Hamakubo T, Kodama T.
  • J Atheroscler Thromb. 2002;9(5):233-42 The generation of monoclonal antibodies against human peroxisome proliferator-activated receptors (PPARs). Tanaka T, Takeno T, Watanabe Y, Uchiyama Y, Murakami T, Yamashita H, Suzuki A, Aoi R, Iwanari H, Jiang SY, Naito M, Tachibana K, Doi T, Shulman AI,
  • Transplantation. 2002 May 15;73(9):1480-6. Detection of an up-regulation of a group of chemokine genes in murine cardiac allograft in the absence of interferon-gamma by means of DNA microarray. Saiura A, Kohro T, Yamamoto T, Izumi A, Wada Y, Aburatani H, Sugawara Y, Hamakubo T, Taniguchi T, Naito M, Kodama T, Makuuchi M.
  • Atherosclerosis. 2002 Apr;161(2):353-63 Effect of BO-653 and probucol on c-MYC and PDGF-A messenger RNA of the iliac artery after balloon denudation in cholesterol-fed rabbits. Inoue K, Cynshi O, Kawabe Y, Nakamura M, Miyauchi K, Kimura T, Daida H, Hamakubo T, Yamaguchi H, Kodama T.
  • Biochem Biophys Res Commun. 2002 Mar 15;291(5):1245-51. Nucleotide-induced conformational changes of PMP70, an ATP binding cassette transporter on rat liver peroxisomal membranes. Kashiwayama Y, Morita M, Kamijo K, Imanaka T.
  • J Atheroscler Thromb. 2002;9(4):178-83. The effect of statins on mRNA levels of genes related to inflammation, coagulation, and vascular constriction in HUVEC. Human umbilical vein endothelial cells. Morikawa S, Takabe W, Mataki C, Kanke T, Itoh T, Wada Y, Izumi A, Saito Y, Hamakubo T, Kodama T.
  • Atherosclerosis. 2002 Mar;161(1):123-32 Production, characterization, and interspecies reactivities of monoclonal antibodies against human class A macrophage scavenger receptors. Tomokiyo R, Jinnouchi K, Honda M, Wada Y, Hanada N, Hiraoka T, Suzuki H, Kodama T, Takahashi K, Takeya M.
  • Cancer Res. 2002 Jan 1;62(1):233-40 Global gene expression analysis of gastric cancer by oligonucleotide microarrays. Hippo Y, Taniguchi H, Tsutsumi S, Machida N, Chong JM, Fukayama M, Kodama T, Aburatani H.
  • J Atheroscler Thromb. 2002;9(5):224-32. Extensive oligonucleotide microarray transcriptome analysis of the rat cerebral artery and arachnoid tissue. Wada H, Hashimoto K, Wada Y, Kobayashi M, Izumi A, Sugiyama A, Kohro T, Hamakubo T, Kodama T.
  • Biochem Biophys Res Commun. 2002 Jan 18;290(2):858-64 HSP90, HSP70, and GAPDH directly interact with the cytoplasmic domain of macrophage scavenger receptors. Nakamura T, Hinagata J, Tanaka T, Imanishi T, Wada Y, Kodama T, Doi T.
  • Arterioscler Thromb Vasc Biol. 2001 Nov;21(11):1801-8 In vivo complex formation of oxidized alpha(1)-antitrypsin and LDL. Mashiba S, Wada Y, Takeya M, Sugiyama A, Hamakubo T, Nakamura A, Noguchi N, Niki E, Izumi A, Kobayashi M, Uchida K, Kodama T.
  • J Biol Chem. 2001 Nov 2;276(44):40497-501. Epub 2001 Aug 31. Anti-atherogenic antioxidants regulate the expression and function of proteasome alpha-type subunits in human endothelial cells. Takabe W, Kodama T, Hamakubo T, Tanaka K, Suzuki T, Aburatani H, Matsukawa N, Noguchi N.
  • Transplantation. 2001 Jul 27;72(2):320-9 A comparison of gene expression in murine cardiac allografts and isografts by means DNA microarray analysis. Saiura A, Mataki C, Murakami T, Umetani M, Wada Y, Kohro T, Aburatani H, Harihara Y, Hamakubo T, Yamaguchi T, Hasegawa G, Naito M, Makuuchi M, Kodama T.
  • Arterioscler Thromb Vasc Biol. 2001 Jun;21(6):917-22 Function of GATA transcription factors in induction of endothelial vascular cell adhesion molecule-1 by tumor necrosis factor-alpha. Umetani M, Mataki C, Minegishi N, Yamamoto M, Hamakubo T, Kodama T
  • Biochem Biophys Res Commun. 2001 Mar 2;281(3):732-40 A human hepatoma cell line expressing hepatitis c virus nonstructural proteins tightly regulated by tetracycline. Huang Y, Uchiyama Y, Fujimura T, Kanamori H, Doi T, Takamizawa A, Hamakubo T, Kodama T.
  • Am J Pathol. 2001 Jan;158(1):179-88. Role of macrophage scavenger receptors in response to Listeria monocytogenes infection in mice. Ishiguro T, Naito M, Yamamoto T, Hasegawa G, Gejyo F, Mitsuyama M, Suzuki H, Kodama T.
  • J Atheroscler Thromb. 2001;8(1):1-6. Kamada N, Kodama T, Suzuki H. Macrophage scavenger receptor (SR-A I/II) deficiency reduced diet-induced atherosclerosis in C57BL/6J mice.
    Yonsei Med J. 2000 Dec;41(6):740-55. In vitro model of atherosclerosis using coculture of arterial wall cells and macrophage. Wada Y, Sugiyama A, Kohro T, Kobayashi M, Takeya M, Naito M, Kodama T.
  • Biochemistry. 2000 Dec 26;39(51):15817-25. A novel low-density lipoprotein receptor-related protein mediating cellular uptake of apolipoprotein E-enriched beta-VLDL in vitro. Sugiyama T, Kumagai H, Morikawa Y, Wada Y, Sugiyama A, Yasuda K, Yokoi N, Tamura S, Kojima T, Nosaka T, Senba E, Kimura S, Kadowaki T, Kodama T, Kitamura
  • J Biol Chem. 2001 Nov 2;276(44):40497-501. Epub 2001 Aug 31. Takabe W, Kodama T, Hamakubo T, Tanaka K, Suzuki T, Aburatani H, Matsukawa N, Noguchi N. Anti-atherogenic antioxidants regulate the expression and function of proteasome alpha-type subunits in human endothelial cells.
  • J Pathol. 2000 Oct;192(2):263-72 Role of macrophage scavenger receptor in endotoxin shock. Kobayashi Y, Miyaji C, Watanabe H, Umezu H, Hasegawa G, Abo T, Arakawa M, Kamata N, Suzuki H, Kodama T, Naito M.
  • Genomics. 2000 Sep 1;68(2):136-43. Direct comparison of GeneChip and SAGE on the quantitative accuracy in transcript profiling analysis. Ishii M, Hashimoto S, Tsutsumi S, Wada Y, Matsushima K, Kodama T, Aburatani H.
  • Biochem Biophys Res Commun. 2000 Jun 7;272(2):370- A novel cell adhesion inhibitor, K-7174, reduces the endothelial VCAM-1 induction by inflammatory cytokines, acting through the regulation of GATA. Umetani M, Nakao H, Doi T, Iwasaki A, Ohtaka M, Nagoya T, Mataki C, Hamakubo T, Kodama T.
  • J Biochem (Tokyo). 2000 Jun;127(6):971-6 Role of myeloperoxidase in the neutrophil-induced oxidation of low density lipoprotein as studied by myeloperoxidase-knockout mouse. Noguchi N, Nakano K, Aratani Y, Koyama H, Kodama T, Niki E.
  • J Atheroscler Thromb. 2000;7(3):145-51 Genomic structure and mapping of human orphan receptor LXR alpha: upregulation of LXRa mRNA during monocyte to macrophage differentiation. Kohro T, Nakajima T, Wada Y, Sugiyama A, Ishii M, Tsutsumi S, Aburatani H, Imoto I, Inazawa J, Hamakubo T, Kodama T, Emi M.
  • J Atheroscler Thromb. 2000;7(3):138-44. Relative induction of mRNA for HMG CoA reductase and LDL receptor by five different HMG-CoA reductase inhibitors in cultured human cells. Morikawa S, Umetani M, Nakagawa S, Yamazaki H, Suganami H, Inoue K, Kitahara M, Hamakubo T, Kodama T, Saito Y.
  • J Atheroscler Thromb. 2000;7(1):39-44. The gene expression profile of human umbilical vein endothelial cells stimulated by tumor necrosis factor alpha using DNA microarray analysis. Murakami T, Mataki C, Nagao C, Umetani M, Wada Y, Ishii M, Tsutsumi S, Kohro T, Saiura A, Aburatani H, Hamakubo T, Kodama T.
  • J Atheroscler Thromb. 2000;7(4):223-30 Gene expression induced by BO-653, probucol and BHQ in human endothelial cells. Takabe W, Mataki C, Wada Y, Ishii M, Izumi A, Aburatani H, Hamakubo T, Niki E, Kodama T, Noguchi N.
  • J Atheroscler Thromb. 2000;7(2):97-103 A novel zinc finger protein mRNA in human umbilical vein endothelial cells is profoundly induced by tumor necrosis factor alpha. Mataki C, Murakami T, Umetani M, Wada Y, Ishii M, Tsutsumi S, Aburatani H, Hamakubo T, Kodama T.
  • Mech Ageing Dev. 1999 Nov;111(2-3):107-21 Structure and function of type I and II macrophage scavenger receptors. Shirai H, Murakami T, Yamada Y, Doi T, Hamakubo T, Kodama T.
  • Biol Pharm Bull. 1999 Oct;22(10):1022-6. VXFD in the cytoplasmic domain of macrophage scavenger receptors mediates their efficient internalization and cell-surface expression. Morimoto K, Wada Y, Hinagata J, Imanishi T, Kodama T, Doi T.
  • Arterioscler Thromb Vasc Biol. 1999 Oct;19(10):2330-9 An in vitro coculture model of transmigrant monocytes and foam cell formation. Takaku M, Wada Y, Jinnouchi K, Takeya M, Takahashi K, Usuda H, Naito M, Kurihara H, Yazaki Y, Kumazawa Y, Okimoto Y, Umetani M, Noguchi N, Niki E, Hamakubo T, Kodama T.

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